Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs4333080 chr3:61713657 C/G 8.5E-5 289 26.37 26.37 16.4 KM Plot
KIRP rs435006 chr14:65325232 A/C 1.08E-9 287 1.2 13.9 26.6 KM Plot
KIRP rs4378827 chr2:100980682 G/C 0.000188 289 23.23 26.28 25.15 KM Plot
KIRP rs4389145 chr16:963708 C/T 0.000113 278 26.57 24.95 14.83 KM Plot
KIRP rs4423729 chr3:154075003 G/A 7.04E-5 288 26.2 23.63 18.2 KM Plot
KIRP rs4429671 chr3:124471899 G/T 8.36E-5 287 25.97 26.8 16.4 KM Plot
KIRP rs443881 chr15:64368453 A/C 2.89E-5 285 28.17 24.22 19.7 KM Plot
KIRP rs4442808 chr16:90064622 G/A 0.00016 287 24.8 35.32 10.47 KM Plot
KIRP rs447649 chr12:45332329 G/T 0.000153 289 24.67 28.12 20.33 KM Plot
KIRP rs449919 chr7:107817725 C/G 3.47E-5 287 16.48 25.65 25.63 KM Plot
KIRP rs451708 chr15:64382370 C/T 2.04E-5 288 28.07 23.62 19.5 KM Plot
KIRP rs45456401 chr16:90048327 G/A 0.000191 287 24.73 38.05 10.23 KM Plot
KIRP rs45486093 chr4:875671 T/C 0.000191 287 26.38 21.63 16.1 KM Plot
KIRP rs45509595 chr6:27840926 T/C 1.36E-8 289 25.6 29.2 9.77 KM Plot
KIRP rs4553596 chr15:26161829 C/T 3.97E-5 287 18.82 20.67 26.4 KM Plot